The detailed information of tRNA gene sequence


Sequence ID>A178000095
Genome IDCP001690
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalogeometricum borinquense DSM 11551 PR 3 [CP001690]
Start position on genome 839799
End posion on genome 839651
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gaaaaaacga
tRNA gene sequence 
GCCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAATGCGGAGATCGTGGGTTCGGA
GCCCACCCCGGGCAtta
Downstream region at tRNA end position 
ctcgacttct
Secondary structure (Cloverleaf model)
>A178000095	Met	CAT
                   a      Atta ctcgacttct
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          G A
                    T     C A C C C     G
      C G A        G      | | | | |     G
    T       T T C G       G T G G G     C
    G         | | |                 T T
    G       T A G C
      A C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=75 (in A-loop)
GGGTTTCACAATCGGTGCGGAACGCCTTGGAAGCCTCCGCCCCGCGCGAGGTCATGCCGGCCTCGCACCT
GGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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