The detailed information of tRNA gene sequence


Sequence ID>A178000118
Genome IDCP001868
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
Start position on genome 788052
End posion on genome 788155
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
acgtgaacgc
tRNA gene sequence 
AGTCCCGTGGTGTAGTGGCCAATCATAGCGGCCTTTGGAGCCGCTGACGGCGGTTCGAAT
CCGCCCGGGACTAttc
Downstream region at tRNA end position 
tgcgaggaac
Secondary structure (Cloverleaf model)
>A178000118	Gln	TTG
                   c      Attc tgcgaggaac
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C G C C     A
      T G A        G      | | | | |     G
    G       T G T G       G G C G G     C
    G         | | +                 T T
    C       T C A T
      C A A        A     TGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T T G
intron: position=38, length=31 (in A-loop)
ATTGGTACGGTTCGATGCGTACCGAGAAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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