The detailed information of tRNA gene sequence


Sequence ID>A178000130
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 978841
End posion on genome 978929
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ctagcttaaa
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCCGCCCTTACAAGGCGGAGGCCCGGGGTTCAA
GTCCCCGCGGGCCCAtta
Downstream region at tRNA end position 
aaaccttcct
Secondary structure (Cloverleaf model)
>A178000130	Val	TAC
                   a      Atta aaaccttcct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    T A C
intron: position=38, length=14 (in A-loop)
AGCCAAGCTGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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