The detailed information of tRNA gene sequence


Sequence ID>A178000131
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1023358
End posion on genome 1023460
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gtagatttga
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCTGCAGACCCGTTTTACCGCGGGTTCGA
ATCCCGCCCCCGGCTCtc
Downstream region at tRNA end position 
accaattttc
Secondary structure (Cloverleaf model)
>A178000131	Cys	GCA
                   a      TCtc accaattttc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TTTACC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
intron: position=38, length=27 (in A-loop)
GGCGATAGCTAAGCAGGGTTCACGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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