The detailed information of tRNA gene sequence


Sequence ID>A178000132
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1159086
End posion on genome 1158983
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
ccaatataga
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTGGAGCGCCGGCCTCGTAAGCCGGTGGACGCGGGTTCAAA
TCCCGCCGGCGGCTCtc
Downstream region at tRNA end position 
cagcacttgt
Secondary structure (Cloverleaf model)
>A178000132	Thr	CGT
                   a      TCtc cagcacttgt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    C       | | | |                 T T
    G       G A G C
      G T G        G     TGGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
intron: position=38, length=29 (in A-loop)
ACGGCTAGAAAACACCGGAGTCGCTGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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