The detailed information of tRNA gene sequence


Sequence ID>A178000136
Genome IDCP001941
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum boonei T469 [CP001941]
Start position on genome 797943
End posion on genome 797819
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cactccgcac
tRNA gene sequence 
GGGGCCGTAGCTTAGCATGGTTGGAGCACCCGGCTGATAACCGGGAGGTCGCCGGTTCAA
ATCCGGTCGGCCCCACtg
Downstream region at tRNA end position 
aacccctttc
Secondary structure (Cloverleaf model)
>A178000136	Ile	GAT
                   c      ACtg aacccctttc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     T G G C C     A
    A C G A        A      + | | | |     A
  T         T T C G       G C C G G     C
  G         + | | |                 T T
  G         G A G C
    T T G          A     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G A T
intron: position=38, length=49 (in A-loop)
GAAGCCCCTTTAAAAAAGCGGCTTTACCCGTAAAAGGGGGCTTTCAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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