The detailed information of tRNA gene sequence


Sequence ID>A178000151
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1405752
End posion on genome 1405638
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aaatatgaaT
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGACTAGGATGCGGGGTTCGGGTCCCCGTGACCCGGGGTTCA
AATCCCCGCGGGCCCATtc
Downstream region at tRNA end position 
ctaaccaaaa
Secondary structure (Cloverleaf model)
>A178000151	Pro	CGG
                   T      ATtc ctaaccaaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGACC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G *
                    C G G
intron: position=38, length=37 (in A-loop)
ACCCCTATAAAAGCAGCCGCTGAATATGGGGCGGAAC
Intron
Comment/Decision
Genome/Seq. Info.-

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