The detailed information of tRNA gene sequence


Sequence ID>A178000157
Genome IDCP002062
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalalkalicoccus jeotgali B3 [CP002062]
Start position on genome 288383
End posion on genome 288486
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
gaggtttcga
tRNA gene sequence 
GGGCACGTAGCTCAGTCCGGATAGAGCGTCGGACTTCTAATCCGACGGTCGTGGGTTCGA
ATCCCATCGTGCCCGttc
Downstream region at tRNA end position 
gctcctttca
Secondary structure (Cloverleaf model)
>A178000157	Arg	TCT
                   a      Gttc gctcctttca
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C T G A        A      + | | | |     G
  C         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     CGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T C T
intron: position=38, length=29 (in A-loop)
TCCTCGGTGCGCCAGCGCCGGGGGAAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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