The detailed information of tRNA gene sequence


Sequence ID>A178000162
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 30864
End posion on genome 30773
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
aatatgggtg
tRNA gene sequence 
GCCGCGGTAGCTCAGCCTGGCTAGAGCGCGGGACTGTGGATCCCGAGGTCCCGGGTTCAA
ATCCCGGCCGCGGCCCtc
Downstream region at tRNA end position 
tcccatagct
Secondary structure (Cloverleaf model)
>A178000162	His	GTG
                   g      CCtc tcccatagct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    C T A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T G
intron: position=38, length=16 (in A-loop)
GGCAAAGGGTGCAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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