The detailed information of tRNA gene sequence


Sequence ID>A178000163
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 62087
End posion on genome 62178
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
agatattgaa
tRNA gene sequence 
GCCGCCGTAGCTCAGCTTTGGGAGAGCGCCCGGCTGAAGACCGGGAGGTCGGGGGTTCAA
ATCCCCCCGGCGGCAtct
Downstream region at tRNA end position 
aatacattaa
Secondary structure (Cloverleaf model)
>A178000163	Phe	GAA
                   a      Atct aatacattaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    T C G A        A      | | | | |     A
  T         C T C G       G G G G G     C
  T         | | | |                 T T
  G         G A G C
    G G A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G A A
intron: position=38, length=17 (in A-loop)
AATATAAGAATTTAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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