The detailed information of tRNA gene sequence


Sequence ID>A178000165
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 1388845
End posion on genome 1388754
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
aaatattata
tRNA gene sequence 
GGGGCCGTCGTCTAGCCTGGCTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCAA
ATCCCGGCGGCCCCACta
Downstream region at tRNA end position 
tttcaatttc
Secondary structure (Cloverleaf model)
>A178000165	Pro	GGG
                   a      ACta tttcaatttc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
intron: position=38, length=16 (in A-loop)
AGATCCCCGCCCGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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