The detailed information of tRNA gene sequence


Sequence ID>A178000170
Genome IDCP002101
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosalsum zhilinae DSM 4017 [CP002101]
Start position on genome 1109071
End posion on genome 1108966
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
accagtaaaa
tRNA gene sequence 
GGGACCGTAGGGTAGACTGGACCATCCTTCGGCGTTCGGGACGCCGGTACCTGAGTTCAA
ATCTCAGCGGTCCCACtc
Downstream region at tRNA end position 
cctctgtatc
Secondary structure (Cloverleaf model)
>A178000170	Pro	CGG
                   a      ACtc cctctgtatc
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C A G A        A      | | | | |     A
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    A C C A        T     GTAC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G *
                    C G G
intron: position=38, length=30 (in A-loop)
ACATGAATCATTCATATTTTCATGCGAATT
Intron
Comment/Decision
Genome/Seq. Info.-

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