The detailed information of tRNA gene sequence


Sequence ID>A178000171
Genome IDCP002117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanolacinia petrolearia DSM 11571 [CP002117]
Start position on genome 1747624
End posion on genome 1747739
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aatttcacaT
tRNA gene sequence 
GCTGTCGTGGCCTAGTCGGTTAGGGCGCCAGACTCATAATCTGGAGGTCGCGGGTTCGGA
TCCCGTCGACAGCATtt
Downstream region at tRNA end position 
ttgtttttaa
Secondary structure (Cloverleaf model)
>A178000171	Met	CAT
                   T      ATtt ttgtttttaa
                     G - C
                     C - G
                     T - A
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     T G C C C     G
      T G A        G      + | | | |     G
    C       T C C G       G C G G G     C
    G       + | | |                 T T
    G       G G G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=40 (in A-loop)
GGGTTTTGTAGCACATTTCGGGGCGCTTGATATCTGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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