The detailed information of tRNA gene sequence


Sequence ID>A178000172
Genome IDCP002278
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermus fervidus DSM 2088 [CP002278]
Start position on genome 476156
End posion on genome 476291
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tttttcttgt
tRNA gene sequence 
GGGGACATGGTGTAGTCAGGCCATCATCTGGGACTCCAGATCCCAGGACCTGGGTTCAAA
TCCCAGTGTCCCCACtt
Downstream region at tRNA end position 
tttctttata
Secondary structure (Cloverleaf model)
>A178000172	Trp	CCA
                   t      ACtt tttctttata
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     A - T          T A
                    T     G A C C C     A
    C T G A        G      | | | | |     A
  A         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    C C A          C     GGAC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=61 (in A-loop)
ATGATTGATGAAAGGCGCGCTTCTGACCTGTGATGAAGATCTGGAGTCCTGAGCAGGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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