The detailed information of tRNA gene sequence


Sequence ID>A178000184
Genome IDCP002408
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera gargensis Ga9.2 [CP002408]
Start position on genome 1830360
End posion on genome 1830447
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taactccggc
tRNA gene sequence 
GGTGGGGTGGCAGAGCGGCCATGCGTTCGCCTGCAGAGCGAATTTATAGGGGTTCGAATC
CCCTCCCCACCTCtc
Downstream region at tRNA end position 
aactatatta
Secondary structure (Cloverleaf model)
>A178000184	Cys	GCA
                   c      TCtc aactatatta
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T C C C C     A
        G A        G      | | | | |     G
      C     G A C G       A G G G G     C
      G       | | |                 T T
      G     A T G C
        C C        G     TTTAT
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C A
intron: position=38, length=15 (in A-loop)
ATCGCGTCAGCGGTT
Intron
Comment/Decision
Genome/Seq. Info.-

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