The detailed information of tRNA gene sequence


Sequence ID>A178000220
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 1139595
End posion on genome 1139684
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gaatgatatt
tRNA gene sequence 
GGGCCCGTAGCTTAGCATGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCGGGGGTTCAA
ATCCCCCCGGGCCCACta
Downstream region at tRNA end position 
taagttagaa
Secondary structure (Cloverleaf model)
>A178000220	Ile	GAT
                   t      ACta taagttagaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    A C G A        A      | | | | |     A
  T         T T C G       G G G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G A T
intron: position=38, length=14 (in A-loop)
ACTTATGGGCAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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