The detailed information of tRNA gene sequence


Sequence ID>A178000223
Genome IDCP002535
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus hospitalis W1 [CP002535]
Start position on genome 1294862
End posion on genome 1294995
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gacatataaT
tRNA gene sequence 
GGGCCCATAGCTCAGCTAGGTAGAGTGCTGGGCTCCAGACCCAGTGGTCCGGGGTTCGAG
TCCCCGTGGGCCCATta
Downstream region at tRNA end position 
tttaaccccg
Secondary structure (Cloverleaf model)
>A178000223	Trp	CCA
                   T      ATta tttaaccccg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     G C C C C     A
      C G A        A      | | | | |     G
    T       C T C G       C G G G G     C
    A       | | | +                 T T
    G       G A G T
      G T A        G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=58 (in A-loop)
ATGAAAAACATTGGGTCTTCAGACCGAAAGGGATGAAGTACATCTGGAAATTGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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