The detailed information of tRNA gene sequence


Sequence ID>A178000230
Genome IDCP002565
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix soehngenii GP6 [CP002565]
Start position on genome 2290818
End posion on genome 2290718
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ccaaacctgt
tRNA gene sequence 
GCCGAGGTCGTCTAGCGGTAGGGCGCCAGCCTGGAGAGCTGGTGACTCGCAAGGGTCTCG
TGAGTTCGAATCTCACCCTCGGCGCta
Downstream region at tRNA end position 
ttttacccgt
Secondary structure (Cloverleaf model)
>A178000230	Ser	GGA
                   t      GCta ttttacccgt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C T C     A
        G A        C      | | | | |     G
      C     T C T G       G T G A G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGACTCGCAAGGGTCTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=16 (in A-loop)
TGAGTTTCTCCTGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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