The detailed information of tRNA gene sequence


Sequence ID>A178000236
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 39873
End posion on genome 39969
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
caatctatga
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGACCAAGGGGCTGGCCTGGAGAGCCAGTGGGGGTCAACCCTGC
GCGGGTTCAAATCCCGCCCCCGGCGCCt
Downstream region at tRNA end position 
tcacggtgat
Secondary structure (Cloverleaf model)
>A178000236	Ser	GGA
                   a      GCCt tcacggtgat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TGGGGGTCAACCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=10 (in A-loop)
TTTGCTGGTC
Intron
Comment/Decision
Genome/Seq. Info.-

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