The detailed information of tRNA gene sequence


Sequence ID>A178000239
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 211513
End posion on genome 211610
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tttatatcaT
tRNA gene sequence 
GCCGGGATCGCCTAGCCTGGTTAGGGCGGCGGCCTGCTAAGCCGTTGGGGGAAACCCCGC
GCGGGTTCAAATCCCGCTCCCGGCGTtt
Downstream region at tRNA end position 
tatccatcat
Secondary structure (Cloverleaf model)
>A178000239	Ser	GCT
                   T      GTtt tatccatcat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C G C C C     A
    C C G A        C      | | | | |     A
  T         T C C G       G C G G G     C
  G         + | | |                 T T
  G         G G G C
    T T A          G     TGGGGGAAACCCCGC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=11 (in A-loop)
AAAAGGCGGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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