The detailed information of tRNA gene sequence


Sequence ID>A178000245
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 1727567
End posion on genome 1727664
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
atatactagT
tRNA gene sequence 
GCGGGGATGCCCGAGCTGGTCCAAGGGGGCGGACTCAAGATCCGCTGGCGAAGGCCATCC
GGGGTTCAAATCCCCGTCCCCGCATac
Downstream region at tRNA end position 
catttaatat
Secondary structure (Cloverleaf model)
>A178000245	Leu	CAA
                   T      ATac catttaatat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G C C C C     A
    T C G A        G      | | | | |     A
  G         G C C C       C G G G G     C
  G           | | |                 T T
  T         A G G G
    C C A          G     TGGCGAAGGCCATC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=12 (in A-loop)
ACCCTGCGGGTG
Intron
Comment/Decision
Genome/Seq. Info.-

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