The detailed information of tRNA gene sequence


Sequence ID>A178000249
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 1802162
End posion on genome 1802252
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
gagatttagT
tRNA gene sequence 
CCCGCCGTAGCTCAGCCCGGTTCAGAGCGCCCGGCTGTAGACCGGGTGGTCCGGGGTTCA
AGTCCCCGCGGCGGGATtc
Downstream region at tRNA end position 
tctctcgtaa
Secondary structure (Cloverleaf model)
>A178000249	Tyr	GTA
                   T      ATtc tctctcgtaa
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T C A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
intron: position=38, length=13 (in A-loop)
ATAAGGGGCAGTT
Intron
Comment/Decision
Genome/Seq. Info.-

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