The detailed information of tRNA gene sequence


Sequence ID>A178000275
Genome IDCP002838
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrolobus fumarii 1A [CP002838]
Start position on genome 614048
End posion on genome 614156
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
tctcgggttt
tRNA gene sequence 
GGGGCCGTCGTCTAGCCTGGACTAGGATGCCAGCCTGGGGCGCTGGTGGCCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
ctctcttcaa
Secondary structure (Cloverleaf model)
>A178000275	Pro	GGG
                   t      ACCA ctctcttcaa
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
intron: position=38, length=31 (in A-loop)
CGTGGAGCCCCGCGCCGGGGTCCACCCGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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