The detailed information of tRNA gene sequence


Sequence ID>A178000278
Genome IDCP002838
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrolobus fumarii 1A [CP002838]
Start position on genome 1308024
End posion on genome 1308166
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttgaacgcgt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGCCGGGCTCCAGACCCGGAGGTCCGGGGTTCGAA
TCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
caaaccagac
Secondary structure (Cloverleaf model)
>A178000278	Trp	CCA
                   t      ACCA caaaccagac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=66 (in A-loop)
ACCCGCCCGGTCCGCTCCGGGTCTGTCGACCCGTGCGCGGGATGAGAGAGGTCTGGCGCGGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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