The detailed information of tRNA gene sequence


Sequence ID>A178000281
Genome IDCP002839
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalopiger xanaduensis SH-6 [CP002839]
Start position on genome 1101035
End posion on genome 1101141
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
caggagatga
tRNA gene sequence 
GCCGAAGTAGCTCAGATGGTAGAGCACCTCGCTGTTAACGAGGTTGTCCCAGGTTCGAGT
CCTGGCTTCGGCGCtt
Downstream region at tRNA end position 
cttcataacc
Secondary structure (Cloverleaf model)
>A178000281	Asn	GTT
                   a      GCtt cttcataacc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     A - T
                     G - C          T G
                    T     G G T C C     A
      A G A        A      | | | | |     G
    T       C T C G       C C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TTGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=33 (in A-loop)
CGGCGATTCAGGTCTTGCCTGTTCGCCGCAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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