The detailed information of tRNA gene sequence


Sequence ID>A178000287
Genome IDCP003050
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalovivax ruber XH-70 [CP003050]
Start position on genome 1521672
End posion on genome 1521497
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ccaaattcga
tRNA gene sequence 
GGGGTCGTGGCCAAGCCAGGCATGGCGACTGACTCCAGATCAGTCAATCGGGGGTTCAAA
TCCCTCCGACCCCAtac
Downstream region at tRNA end position 
ttctgctgcg
Secondary structure (Cloverleaf model)
>A178000287	Trp	CCA
                   a      Atac ttctgctgcg
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | + | | |     A
    C       A C C G       G G G G G     C
    A       | | | |                 T T
    G       T G G C
      G C A        G     CAATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=102 (in A-loop)
AGGCATACCCGCCCGGGACGACACTCCAGCTGATATACTGATCGAGTGGCTGATCACCGCTCGTGTGATG
ACCCTCTGGAGTTCCGAGGTGGGTCCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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