The detailed information of tRNA gene sequence


Sequence ID>A178000296
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 377570
End posion on genome 377476
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cggggtctgt
tRNA gene sequence 
GCCGCCGTGGCTTAGCCCGGTAAAGCGGCTGATTCGTAATCAGCAGGTCATGGGTTCGAA
TCCCATCGGCGGCTtct
Downstream region at tRNA end position 
ctattttatc
Secondary structure (Cloverleaf model)
>A178000296	Thr	CGT
                   t      Ttct ctattttatc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
      C G A        G      | | | | |     G
    C       T T C G       A T G G G     C
    C       | | | |                 T T
    G       A A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A *
                    C G T
intron: position=38, length=21 (in A-loop)
AGGCTGGTTTTGGCCCGATAT
Intron
Comment/Decision
Genome/Seq. Info.-

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