The detailed information of tRNA gene sequence


Sequence ID>A178000299
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 802088
End posion on genome 802189
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tgatctcatt
tRNA gene sequence 
GCCAAGGTGGCGGAGCGGTTACGCAATTGCCTGCAGAGCAATTCCACTCCGGTTCGAATC
CGGACCTTGGCTtcg
Downstream region at tRNA end position 
agtgtggcgg
Secondary structure (Cloverleaf model)
>A178000299	Cys	GCA
                   t      Ttcg agtgtggcgg
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G      | | | | |     G
      C     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        T T        A     TCCAC
                    A - T
                    T - A
                    T - A
                    G - C
                    C - G
                  C       A
                  T       G *
                    G C A
intron: position=38, length=30 (in A-loop)
AATATAGGGGCCTCCGGCCCCAGTGCAGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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