The detailed information of tRNA gene sequence


Sequence ID>A178000304
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 267860
End posion on genome 267981
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cccttgcctt
tRNA gene sequence 
GGGGCTGTAGCTTAGCCAGGTTAGAGCGCCCGGCTCATAACCGGGCGGTCGCAGGTTCGA
ATCCTGCCAGCCCCACtg
Downstream region at tRNA end position 
ggccagtagc
Secondary structure (Cloverleaf model)
>A178000304	Met	CAT
                   t      ACtg ggccagtagc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C G T C C     A
    C C G A        A      | | | | |     G
  A         T T C G       G C A G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=46 (in A-loop)
AAAGCCCCTTTGAAAAGCGGCTTTACCCGTAAAGGGGCATTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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