The detailed information of tRNA gene sequence


Sequence ID>A178000307
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 569986
End posion on genome 569866
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
caccacccac
tRNA gene sequence 
GGGGCCGTGGGGTAGCTTGGTTATCCTACCGGCTTTGGGAGCCGGTGACTCCGGTTCAAA
TCCGGGCGGCCCCACtc
Downstream region at tRNA end position 
tttttaatat
Secondary structure (Cloverleaf model)
>A178000307	Pro	TGG
                   c      ACtc tttttaatat
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G G C C     A
    T C G A        G      + | | | |     A
  T         T G G G       T C C G G     C
  G           | | +                 T T
  G         T C C T
    T T A          A     TGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G *
                    T G G
intron: position=38, length=46 (in A-loop)
AAGGGAACCACCAGCGGGTTCCTCTACCTCCTGCAACCCTCAAAAA
Intron
Comment/Decision
Genome/Seq. Info.-

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