The detailed information of tRNA gene sequence


Sequence ID>A178000310
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 1238873
End posion on genome 1238755
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
actggattgt
tRNA gene sequence 
GCCGCCGTAGCTTAGTAGGCTGGAGCGGCCGGCTGTTAACCGGCAGGTCGCAGGTTCGAA
TCCTGCCGGCGGCGCtg
Downstream region at tRNA end position 
gtgtggtagc
Secondary structure (Cloverleaf model)
>A178000310	Asn	GTT
                   t      GCtg gtgtggtagc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G T C C     A
      T G A        A      | | | | |     G
    A       T T C G       G C A G G     C
    G       + | | |                 T T
    G       G A G C
      C T G        G     AGGTC
                    G - C
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=44 (in A-loop)
AGAAGCCCTTTAAAAAAGGGCTTTACCCCAAAAGGGCCGCAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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