The detailed information of tRNA gene sequence


Sequence ID>A178000311
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 1284008
End posion on genome 1284131
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atctttgaaa
tRNA gene sequence 
GCCACCGTAGCTTAGCCCGGCAGAGCGGCTGATTCGTAATCAGCAGGTCGGGGGTTCGAA
TCCCCCCGGTGGCTCtc
Downstream region at tRNA end position 
agtcaaagat
Secondary structure (Cloverleaf model)
>A178000311	Thr	CGT
                   a      TCtc agtcaaagat
                     G - C
                     C - G
                     C - G
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       T T C G       G G G G G     C
    C       + | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A *
                    C G T
intron: position=38, length=49 (in A-loop)
TAAGCCCTTTGGAAAAGGGCTTTACCCCAAACCGTATGGGCTTCGAAAT
Intron
Comment/Decision
Genome/Seq. Info.-

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