The detailed information of tRNA gene sequence


Sequence ID>A178000313
Genome IDCP003168
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum sp. MAR08-339 [CP003168]
Start position on genome 1407684
End posion on genome 1407803
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agataggcat
tRNA gene sequence 
AGCGGGGTGGGGTAGCCAGGAAATCCCGCCGGGCTCATAACCCGGAGATCGGTGGTTCAA
ATCCACCCCCCGCTACtt
Downstream region at tRNA end position 
ttatcaccgt
Secondary structure (Cloverleaf model)
>A178000313	Met	CAT
                   t      ACtt ttatcaccgt
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C C A C C     A
    C C G A        G      | | | | |     A
  A         T G G G       G G T G G     C
  G           | | |                 T T
  G         T C C C
    A A A          G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=44 (in A-loop)
AAGCCCCTTTGGAAAAGGTGATTTACCCCAAAGGGGCCTGTGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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