The detailed information of tRNA gene sequence


Sequence ID>A178000317
Genome IDCP003243
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella conradii HZ254 [CP003243]
Start position on genome 1293215
End posion on genome 1293339
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttttcgagaa
tRNA gene sequence 
GCCGGGGTAGTCTAGTGGTAAGGCGCAAGCCTGGAAAGCTTGTGGGGGGAAACTCCCGCA
AGGGTTCGAGTCCCTTCCCCGGCGCCt
Downstream region at tRNA end position 
ttaatgtgag
Secondary structure (Cloverleaf model)
>A178000317	Ser	GGA
                   a      GCCt ttaatgtgag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     T T C C C     A
        G A        A      | | | | |     G
      T     T C T G       A A G G G     C
      G     | | + |                 T T
      G     A G G C
        T A        G     TGGGGGGAAACTCCCGC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=39 (in A-loop)
TTGTGGTGAGGCGTAAGCCTGTAATCCCCATTACCAGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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