The detailed information of tRNA gene sequence


Sequence ID>A178000318
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 204073
End posion on genome 204171
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
caaatgtaaa
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTTAGGATGCCCGCCTTACACGCGGGTGACCCCGGGTTCGAAT
CCCGGCGGGCCCACtc
Downstream region at tRNA end position 
ctcttttgag
Secondary structure (Cloverleaf model)
>A178000318	Val	TAC
                   a      ACtc ctcttttgag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     TGACC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A *
                    T A C
intron: position=38, length=25 (in A-loop)
AGGCGCACCCGCAACAGCCTAAGCT
Intron
Comment/Decision
Genome/Seq. Info.-

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