The detailed information of tRNA gene sequence


Sequence ID>A178000376
Genome IDCP005934
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
Start position on genome 868794
End posion on genome 868890
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
agcgtccaaa
tRNA gene sequence 
GCCGGGATGACAGAGCGGCCATGTGGCGGACTGCAGATCCGTACACCCGAGTTCAAATCT
CGGTCCCGGCCCCA
Downstream region at tRNA end position 
ttttttgtgc
Secondary structure (Cloverleaf model)
>A178000376	Cys	GCA
                   a      CCCA ttttttgtgc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C T C     A
        G A        G      | | | | |     A
      C     G A C A       C C G A G     C
      G       | | |                 T T
      G     A T G T
        C C        G     ACAC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G C A
intron: position=38, length=23 (in A-loop)
AGATGCAGTTTGCATACACAGTT
Intron
Comment/Decision
Genome/Seq. Info.-

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