The detailed information of tRNA gene sequence


Sequence ID>A178000377
Genome IDCP005934
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
Start position on genome 1766986
End posion on genome 1767083
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
gaggctacag
tRNA gene sequence 
GCCGTCGTAGCTCAGCTGGTAGAGCGTATGACTGTTAATCATAAGGTCAACGGTTCGAAC
CCGTTCGACGGCGCat
Downstream region at tRNA end position 
ttatttttta
Secondary structure (Cloverleaf model)
>A178000377	Asn	GTT
                   g      GCat ttatttttta
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     G - C          C A
                    T     T T G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A A C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    T - A
                    A - T
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    G T T
intron: position=38, length=24 (in A-loop)
ATCCTCTTAGAAAGAGGAACAGTC
Intron
Comment/Decision
Genome/Seq. Info.-

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