The detailed information of tRNA gene sequence


Sequence ID>A178000380
Genome IDCP005962
Search identical group
Phylum/ClassEuryarchaeota
SpeciesSalinarchaeum sp. Harcht-Bsk1 [CP005962]
Start position on genome 3088069
End posion on genome 3088239
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atcgtatcgc
tRNA gene sequence 
GGGGTCGTGGCCCAGTCCGGCAGGGCGACTGACTCCAGATCAGTCGATCGGGGGTTCAAA
TCCCTCCGACCCCAttt
Downstream region at tRNA end position 
gaaataaaaa
Secondary structure (Cloverleaf model)
>A178000380	Trp	CCA
                   c      Attt gaaataaaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | + | | |     A
    C       C C C G       G G G G G     C
    C       | | | |                 T T
    G       G G G C
      G C A        G     CGATC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=97 (in A-loop)
AGAGCCCGCCTCTGACGAACTACCTGATATACGGAACGGCCGGGTTGATCACCGGGCGTGACGACGACGC
TCTGGAGTTCCGAGGCGGATCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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