The detailed information of tRNA gene sequence


Sequence ID>A178000392
Genome IDCP006867
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus islandicus DSM 13165 [CP006867]
Start position on genome 334831
End posion on genome 334728
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tccttcacat
tRNA gene sequence 
GCCGGGGTGCCCGAGTGGCCTAAGGGGTCGGGCTGCAGACCCGATCTTTCCCGGGTTCGA
ATCCCGGCCCCGGCTCCA
Downstream region at tRNA end position 
ttttcaacac
Secondary structure (Cloverleaf model)
>A178000392	Cys	GCA
                   t      TCCA ttttcaacac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      T G A        G      | | | | |     G
    G       G C C C       C C G G G     C
    G         | | |                 T T
    C       A G G G
      C T A        G     TCTTTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
intron: position=38, length=26 (in A-loop)
TGGCGTATAGGCCTCCGCCTGTCGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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