The detailed information of tRNA gene sequence


Sequence ID>A178000399
Genome IDCP006884
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula hispanica N601 [CP006884, CP006885]
Start position on genome 2111405
End posion on genome 2111549
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atgcacccgc
tRNA gene sequence 
GCCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAATGCGGAGATCGAGGGTTCGGA
GCCCTCCCCGGGCAttt
Downstream region at tRNA end position 
tccagatcac
Secondary structure (Cloverleaf model)
>A178000399	Met	CAT
                   c      Attt tccagatcac
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          G A
                    T     C T C C C     G
      C G A        G      | | | | |     G
    T       T T C G       G A G G G     C
    G         | | |                 T T
    G       T A G C
      A C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=71 (in A-loop)
GGGTCTTTCGACTCATGCGGCAGTGCACCCGTCATGACCCCGGGGCGCTCGTCACGCCCCAGACCTGGGC
C
Intron
Comment/Decision
Genome/Seq. Info.-

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