The detailed information of tRNA gene sequence


Sequence ID>A178000404
Genome IDCP006977
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius SUSAZ [CP006977]
Start position on genome 478188
End posion on genome 478281
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atgttatagT
tRNA gene sequence 
GGGCCCGTAGCTTAGCCCGGTAGAGCGCCCGGCTCATAACCGGGTGGTCCGGGGTTCAAG
TCCCCGCGGGCCCATgg
Downstream region at tRNA end position 
tctccgctaa
Secondary structure (Cloverleaf model)
>A178000404	Met	CAT
                   T      ATgg tctccgctaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T T C G       C G G G G     C
    C       + | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=18 (in A-loop)
AACTATATACGTGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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