The detailed information of tRNA gene sequence


Sequence ID>A178000406
Genome IDCP006977
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius SUSAZ [CP006977]
Start position on genome 557292
End posion on genome 557196
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atttttagct
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGTAGAGCGGCGGGCTTTTAACCCGTAGGTCCCGGGTTCAAA
TCCCGGCGGGCCCGCgc
Downstream region at tRNA end position 
tatttattct
Secondary structure (Cloverleaf model)
>A178000406	Lys	TTT
                   t      GCgc tatttattct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T T T
intron: position=38, length=22 (in A-loop)
ACCGCGGGTCGCGCGGGAAGCG
Intron
Comment/Decision
Genome/Seq. Info.-

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