The detailed information of tRNA gene sequence


Sequence ID>A178000412
Genome IDCP007026
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopelagicus brevis CN25 [CP007026]
Start position on genome 670256
End posion on genome 670155
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
tactttgcat
tRNA gene sequence 
GTCGGGATAGCCAAGCTTGGTCCAAGGCGGACGCCTCGAAAGCGTCTGTGCTCTGCACAC
GGGGGTTCAAATCCCTCTCCCGGCGCCt
Downstream region at tRNA end position 
ttttttctaa
Secondary structure (Cloverleaf model)
>A178000412	Ser	CGA
                   t      GCCt ttttttctaa
                     G - C
                     T + G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C T C C C     A
    T C G A        A      | + | | |     A
  T         A C C G       G G G G G     C
  G           | | |                 T T
  G         A G G C
    T C C A        G     TGTGCTCTGCACAC
                    G - C
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G A
intron: position=38, length=15 (in A-loop)
ATCTCAAAACAGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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