The detailed information of tRNA gene sequence


Sequence ID>A178000417
Genome IDCP007060
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium sp. DL1 [CP007060]
Start position on genome 539867
End posion on genome 539754
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tccacgcaca
tRNA gene sequence 
GGGCCCTTAGCTTAGTCTGGTTTAAAGCCCCCGGCTCATAACCGGGTGAGCGGTGGTTCA
AATCCGCCAGGGCCCAtac
Downstream region at tRNA end position 
acccactcgg
Secondary structure (Cloverleaf model)
>A178000417	Met	CAT
                   a      Atac acccactcgg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C C G C C     A
    C T G A        A      | | + | |     A
  T         T T C G       G G T G G     C
  G         | | | |                 T T
  G         A A G C
    T T T A        C     TGAGC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=38 (in A-loop)
TCAGTTGTCTGTCACTTTGTGTGGCGGGACTGTGAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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