The detailed information of tRNA gene sequence


Sequence ID>A178000422
Genome IDCP007174
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera evergladensis SR1 [CP007174]
Start position on genome 1914935
End posion on genome 1915088
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
actacttcgt
tRNA gene sequence 
GGAGGGGTAGCGAAGCCCGGTCAAACGCGCAGGACTCAAGATCCCGTCCCTCAGGGGTTC
GTGGGTTCAAATCCCACCCCCTCCACCA
Downstream region at tRNA end position 
cattcctttt
Secondary structure (Cloverleaf model)
>A178000422	Leu	CAA
                   t      ACCA cattcctttt
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     A
  C         A G C G       G T G G G     C
  G           | | |                 T T
  G         A C G C
    T C A A        G     TCCCTCAGGGGTTC
                    C - G
                    A   C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=66 (in A-loop)
ATCAGATGCGCGCACAGGCGACATCATTTACTCCCGCAACACCGACACACGAGCGCGGGATGGGTG
Intron
Comment/Decision
Genome/Seq. Info.-

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