The detailed information of tRNA gene sequence


Sequence ID>A178000423
Genome IDCP007174
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera evergladensis SR1 [CP007174]
Start position on genome 2283243
End posion on genome 2283138
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tgcactggcg
tRNA gene sequence 
GCCTTCGTAGTATAGCCTGGTGAGTATAGGCGGCTGTGGACCGCTTGAGGAGGGTTCAAA
TCCCTCCGAAGGCCCCA
Downstream region at tRNA end position 
cttgattttt
Secondary structure (Cloverleaf model)
>A178000423	His	GTG
                   g      CCCA cttgattttt
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C C G A        A      | | | | |     A
  T         T A T G       G A G G G     C
  G         + | | +                 T T
  G         G T A T
    T G A          A     TGAG
                    G + T
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T G
intron: position=38, length=29 (in A-loop)
ACTGTTCTGAATATGAAATTTCGGCAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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