The detailed information of tRNA gene sequence


Sequence ID>A178000424
Genome IDCP007174
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera evergladensis SR1 [CP007174]
Start position on genome 2311225
End posion on genome 2311122
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gtgcttggtt
tRNA gene sequence 
GCCGGGGTCGCCTAGCCCGGGAGGGCGCAAGCCTGGAAAGCTTGTGACCCGTAAGGGTCC
CGAGGGTTCAAATCCCTCTCCCGGCGCCA
Downstream region at tRNA end position 
ttcttacttt
Secondary structure (Cloverleaf model)
>A178000424	Ser	GGA
                   t      GCCA ttcttacttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C T C C C     A
      C G A        C      | | | | |     A
    C       T C C G       G A G G G     C
    C       + | | |                 T T
    G       G G G C
      G G A        G     TGACCCGTAAGGGTCCC
                    C - G
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=15 (in A-loop)
ATCTGCTTTCCAGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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