The detailed information of tRNA gene sequence


Sequence ID>A178000458
Genome IDCP009505
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina sp. MTP4 [CP009505]
Start position on genome 3406762
End posion on genome 3406650
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgtgttgcaa
tRNA gene sequence 
GCCCGGATAGCCTAGTCGGTTGGGGCGCCAGACTCATAATCTGGAGGTCGCGTGTTCGAG
TCACGCTCCGGGCACtt
Downstream region at tRNA end position 
ttatttctca
Secondary structure (Cloverleaf model)
>A178000458	Met	CAT
                   a      ACtt ttatttctca
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T G
                    T     C G C A C     A
      T G A        A      | | | | |     G
    C       T C C G       G C G T G     C
    G       + | | |                 T T
    G       G G G C
      T T G        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=38 (in A-loop)
GGGACCTTTAATATGAGGCGTCTTTAATCTCCTGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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