The detailed information of tRNA gene sequence


Sequence ID>A178000487
Genome IDCP009516
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
Start position on genome 4147942
End posion on genome 4147831
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgtgttgcaa
tRNA gene sequence 
GCCCGGATAGCCTAGTCGGTTGGGGCGCCAGACTCATAATCTGGAGGTCGCGTGTTCGAG
TCACGCTCCGGGCACCt
Downstream region at tRNA end position 
aatttttact
Secondary structure (Cloverleaf model)
>A178000487	Met	CAT
                   a      ACCt aatttttact
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T G
                    T     C G C A C     A
      T G A        A      | | | | |     G
    C       T C C G       G C G T G     C
    G       + | | |                 T T
    G       G G G C
      T T G        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=36 (in A-loop)
GGGACTTTATATGAGGCGTCTTTAATCTCCTGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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