The detailed information of tRNA gene sequence


Sequence ID>A178000499
Genome IDCP009524
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina sp. Kolksee [CP009524]
Start position on genome 3517666
End posion on genome 3517474
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tccttgtaaa
tRNA gene sequence 
GGGGCTGTGGCCTAGCCCGGCATGGCGATGGGCTCCAGACCCGTCGATCGTGAGTTCGAA
TCTCACCAGCCCCACgt
Downstream region at tRNA end position 
tttttcttta
Secondary structure (Cloverleaf model)
>A178000499	Trp	CCA
                   a      ACgt tttttcttta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=118 (in A-loop)
CGGATAAATGATGAACAACGGGTATACTGAGTCTTTCCCGACGGGGCAAGATAATGAGGAACCGTTGGAG
CACTGATAGATGCTCACCAGAAAACTGTGTAAGCAGTTGTTCGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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